Once the project is created, on project setting page user will get an option to 'Set up' Jira.
Click Setup under Jira
Selection the radio button for the required connection.
Enter the project key and use the slider button based on requirement to use Project Board or JQL.
Select the board from board dropdown or enter the JQL which is used in Jira for identifying a project issues.
Click Save button.
Edit Jira Configuration
Once tool is configured and user wishes to make changes to configuration then-
Navigate to Settings > Project > Edit Project
Click Edit configuration under Jira
Questions: